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\u4eba\u751f\u63a5\u89e6\u7684\u7b2c\u4e00\u4e2a\u811a\u672c\uff1a<\/p>\n
import re
\nimport sys, getopt
\nimport operator
\nfrom Bio import SeqIO
\nfrom Bio.Seq import Seq
\nfrom Bio.SeqRecord import SeqRecord
\nfrom Bio.Alphabet import generic_nucleotide
\nimport re
\nimport sys, getopt
\nimport operator<\/p>\n
opts, args = getopt.getopt(sys.argv[1:], “c:i:o:”)
\nblast_info = “”
\nout_file = “”
\nfor op, value in opts:
\nif op ==”-o”: #ARG_pattern_MIN_7030.fasta or ARG_pattern_MAX_7030.fasta
\nout_file = open(value, “w”)
\nfilename_pro = str (value)
\nname_item = filename_pro.strip().split(“.”)
\nfilename = name_item[0]
\nif op == “-i”: # All_ARGcontig_remove_S_nr.fasta
\nblast_info = open(value, “r”)
\nif op == “-c”: #Contig_ARG_region_abstract_info_7030.out
\nlocation_info = open(value, “r”)<\/p>\n
for record in SeqIO.parse(blast_info,”fasta”):
\nPattern_star = 1 – 80
\nPattern_end = 90
\npattern_seq = record.seq[Pattern_star:Pattern_end]
\nSeq_len = str(len(pattern_seq))
\npattern_ID = filename +”:”+Seq_len
\nNew_record = SeqRecord(pattern_seq,id = pattern_ID, description = “”)
\nSeqIO.write(New_record, out_file,”fasta”)<\/p>\n
blast_info.close()
\nout_file.close()<\/p>\n
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\u4eba\u751f\u63a5\u89e6\u7684\u7b2c\u4e00\u4e2a\u811a\u672c\uff1a import re import sys, getopt import operator from Bio import SeqIO from Bio.Seq import Seq from Bio.SeqRecord import SeqRecord from Bio.Alphabet import generic_nucleotide import re import sys, getopt import operator opts, args = getopt.getopt(sys.argv[1:], “c:i:o:”) blast_info = “” out_file = “” for op, value in opts: if op ==”-o”: #ARG_pattern_MIN_7030.fasta 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