{"id":183,"date":"2017-12-07T15:48:19","date_gmt":"2017-12-07T07:48:19","guid":{"rendered":"http:\/\/www.wuchangsong.com\/?p=183"},"modified":"2017-12-07T15:48:19","modified_gmt":"2017-12-07T07:48:19","slug":"pheatmap%e5%8c%85%e7%bb%98%e5%88%b6%e7%83%ad%e5%9b%be","status":"publish","type":"post","link":"http:\/\/www.wuchangsong.com\/?p=183","title":{"rendered":"pheatmap\u5305\u7ed8\u5236\u70ed\u56fe"},"content":{"rendered":"<p>\u76ee\u524d\uff0c\u7ed8\u5236\u70ed\u56fe\u7684\u8f6f\u4ef6\u6709\u5f88\u591a\uff0c\u6211\u4e5f\u5c1d\u8bd5\u4e86\u51e0\u6b3e\u8f6f\u4ef6\uff0c\u89c9\u5f97R\u7684pheatmap\u5305\u6700\u597d\u7528\u3002<\/p>\n<h3>pheatmap\u5b89\u88c5\uff1a<\/h3>\n<pre>source(\"http:\/\/bioconductor.org\/biocLite.R\")\r\nbiocLite(\"pheatmap\")<\/pre>\n<p>pheatmap\u7ed8\u5236\u70ed\u56fe\u53ea\u9700\u4e09\u6b65\uff0c\u5bfc\u5165\u6570\u636e\u7ed3\u6784\u5982\u4e0b\u56fe\uff1a<br \/>\n<img decoding=\"async\" loading=\"lazy\" class=\"alignnone size-full wp-image-184\" src=\"http:\/\/www.wuchangsong.com\/wp-content\/uploads\/2017\/12\/QQ\u56fe\u724720171207152602.png\" alt=\"\" width=\"280\" height=\"228\" \/><\/p>\n<p>\u8f6f\u4ef6\u8c03\u7528\uff1a<\/p>\n<pre>library(pheatmap)<\/pre>\n<p>\u6570\u636e\u5bfc\u5165\uff1a<\/p>\n<pre>data&lt;- read.table(\"456.txt\",head = T,row.names=1,sep=\"\\t\")<\/pre>\n<p>\u7ed8\u56fe\uff1a<\/p>\n<pre>pheatmap(data,cluster_rows=T,cluster_cols=T,scale=\"none\",border_color=\"white\",color=colorRampPalette(rev(c(\"red\",\"white\",\"blue\")))(102),file=\"test.pdf\",width=3,height=5)<\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\"alignnone size-full wp-image-185\" src=\"http:\/\/www.wuchangsong.com\/wp-content\/uploads\/2017\/12\/QQ\u56fe\u724720171207153731.png\" alt=\"\" width=\"365\" height=\"606\" \/><br \/>\npheatmap\u53ef\u8c03\u7684\u53c2\u6570\u6709\u5f88\u591a\uff0c\u53ef\u6839\u636e\u9700\u8981\u81ea\u884c\u6dfb\u52a0\uff0c\u8c03\u6574<\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u76ee\u524d\uff0c\u7ed8\u5236\u70ed\u56fe\u7684\u8f6f\u4ef6\u6709\u5f88\u591a\uff0c\u6211\u4e5f\u5c1d\u8bd5\u4e86\u51e0\u6b3e\u8f6f\u4ef6\uff0c\u89c9\u5f97R\u7684pheatmap\u5305\u6700\u597d\u7528\u3002 pheatmap\u5b89\u88c5\uff1a source(&#8220;http:\/\/bioconductor.org\/biocLite.R&#8221;) biocLite(&#8220;pheatmap&#8221;) pheatmap\u7ed8\u5236\u70ed\u56fe\u53ea\u9700\u4e09\u6b65\uff0c\u5bfc\u5165\u6570\u636e\u7ed3\u6784\u5982\u4e0b\u56fe\uff1a \u8f6f\u4ef6\u8c03\u7528\uff1a library(pheatmap) \u6570\u636e\u5bfc\u5165\uff1a data&lt;- read.table(&#8220;456.txt&#8221;,head = T,row.names=1,sep=&#8221;\\t&#8221;) \u7ed8\u56fe\uff1a pheatmap(data,cluster_rows=T,cluster_cols=T,scale=&#8221;none&#8221;,border_color=&#8221;white&#8221;,color=colorRampPalette(rev(c(&#8220;red&#8221;,&#8221;white&#8221;,&#8221;blue&#8221;)))(102),file=&#8221;test.pdf&#8221;,width=3,height=5) pheatmap\u53ef\u8c03\u7684\u53c2\u6570\u6709\u5f88\u591a\uff0c\u53ef\u6839\u636e\u9700\u8981\u81ea\u884c\u6dfb\u52a0\uff0c\u8c03\u6574<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[10],"tags":[],"_links":{"self":[{"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/posts\/183"}],"collection":[{"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=183"}],"version-history":[{"count":1,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/posts\/183\/revisions"}],"predecessor-version":[{"id":186,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/posts\/183\/revisions\/186"}],"wp:attachment":[{"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=183"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=183"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=183"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}