{"id":719,"date":"2021-03-20T18:16:25","date_gmt":"2021-03-20T10:16:25","guid":{"rendered":"http:\/\/www.wuchangsong.com\/?p=719"},"modified":"2021-03-20T18:16:25","modified_gmt":"2021-03-20T10:16:25","slug":"metabolanalyze%e5%ae%9e%e7%8e%b0pareto-scaling","status":"publish","type":"post","link":"http:\/\/www.wuchangsong.com\/?p=719","title":{"rendered":"MetabolAnalyze\u5b9e\u73b0Pareto scaling"},"content":{"rendered":"<pre>BiocManager::install(\"MetabolAnalyze\")\nlibrary(\"MetabolAnalyze\")\ndata &lt;- read.delim('mouse_gc_TMM_cross.xls', row.names = 1, sep = '\\t', check.names = FALSE)\ncol_names &lt;- colnames(data)\nrow_names &lt;- rownames(data)\ndata &lt;- as.matrix(data)\nb = scaling(data,type = \"pareto\")\nboxplot(b)\nwrite.table(b, file=\"Pareto_scaled.xls\", sep=\"\\t\", quote=F, row.names=T, col.names=T)\n<\/pre>\n","protected":false},"excerpt":{"rendered":"<p>BiocManager::install(&#8220;MetabolAnalyze&#8221;) library(&#8220;MetabolAnalyze&#8221;) data &lt;- read.delim(&#8216;mouse_gc_TMM_cross.xls&#8217;, row.names = 1, sep = &#8216;\\t&#8217;, check.names = FALSE) col_names &lt;- colnames(data) row_names &lt;- rownames(data) data &lt;- as.matrix(data) b = scaling(data,type = &#8220;pareto&#8221;) boxplot(b) write.table(b, file=&#8221;Pareto_scaled.xls&#8221;, sep=&#8221;\\t&#8221;, quote=F, row.names=T, col.names=T)<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[5,10],"tags":[],"_links":{"self":[{"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/posts\/719"}],"collection":[{"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=719"}],"version-history":[{"count":1,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/posts\/719\/revisions"}],"predecessor-version":[{"id":720,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=\/wp\/v2\/posts\/719\/revisions\/720"}],"wp:attachment":[{"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=719"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=719"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.wuchangsong.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=719"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}