Anvi’o 安装

Dependencies

  • DIAMOND or NCBI’s blastp for search.
  • MCL for clustering.
  • muscle for alignment.

easy install through conda:

 

wget -c https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod 777 Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
#在询问是否将conda加入环境变量的时候选择no
cd miniconda3/bin/
chmod 777 activate
. ./activate
#添加频道
conda config --env --add channels conda-forge
conda config --env --add channels bioconda

conda create -n anvio-6 python=3.6
conda activate anvio-6
conda install -y anvio=6
conda install -y diamond=0.9.14

anvi’o官网教程:http://merenlab.org/2016/11/08/pangenomics-v2/

发表评论

电子邮件地址不会被公开。 必填项已用*标注